PriMicro Database

For classification, identification and molecular phylogenetic analyses of microbes

Primer Detail

Primer name
RPB2-6F2
Gene name
polymerase second largest subunit (RPB2)
Primer sequence (5'-3')
TGATNGARTTCATGATCAA
Direction
F
Category
specific primer
Target
fungi
Paired primer
RPB2-6R2
Reference
Tanaka E, Shrestha B, Shivas RG (2020) Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae. Mycologia 112: 649–660.
Literature
Tanaka E, Tanada K, Hosoe T, Shrestha B, Kolařík M, Liu M (2023) In search of lost ergots: phylogenetic re-evaluation of Claviceps species in Japan and their biogeographic patterns revealed. Studies in Mycology 106: 1–39.
Reference Strain
Claviceps miscanthicolaMAFF 247561
Claviceps tandaeMAFF 247311