PriMicro Database

For classification, identification and molecular phylogenetic analyses of microbes

Primer Detail

Primer name
RPB1-Cr
RPB1C
fRPB1-C rev
Gene name
RNA polymerase II (RPB1)
Primer sequence (5'-3')
CCNGCDATNTCRTTRTCCATRTA
Direction
R
Category
specific primer
Target
fungi
Reference
Morehouse EA, James TY, Ganley AR, Vilgalys R, Berger L, Murphy PJ and Longcore JE (2003) Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Molecular Ecology 12: 395-403.
Literature
Conrad L. Schocha, Keith A. Seifertb, Sabine Huhndorfc, Vincent Robertd, John L. Spougea, C. André Levesqueb, Wen Chenb and Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences
AM Minnis, AH Kennedy, DB Grenier, ME Palm and AY Rossman (2012) Phylogeny and taxonomic revision of the Planistromellaceae including its coelomycetous anamorphs: contributions towards a monograph of the genus Kellermania. Persoonia 29: 11-28.
Bischoff JF, Rehner SA and Humber RA (2006) Metarhizium frigidum sp. nov.: a cryptic species of M. anisopliae and a member of the M. flavoviride complex. Mycologia 98: 737-745.
X-Z Liu, Q-M Wang, B Theelen, M Groenewald, F-Y Bai and T Boekhout (2015) Phylogeny of tremellomycetous yeasts and related dimorphic and filamentous basidiomycetes reconstructed from multiple gene sequence analyses. Studies in Mycology 81: 1-26.
Q-M Wang, M Groenewald, M Takashima, B Theelen, P-J Han, X-Z Liu, T Boekhout and F-Y Bai (2015) Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses. Studies in Mycology 81: 27-53.
Q-M Wang, B Theelen, M Groenewald, F-Y Bai and T Boekhout (2014) Moniliellomycetes and Malasseziomycetes, two new classes in Ustilaginomycotina. Persoonia 33: 41-47.
Reference Strain
Bannoa hahajimensisJCM 10336
Bensingtonia ingoldiiJCM 7445, NBRC 10578
Bensingtonia miscanthiJCM 5733, NBRC 10579
Bensingtonia musaeIFM 49877, JCM 8801, NBRC 102559
Bensingtonia naganoensisJCM 5978, NBRC 10580
Bensingtonia phylladaJCM 7476, NBRC 10581
Bensingtonia sakaguchiiJCM 10047, NBRC 102558
Bensingtonia subroseaIFM 57755, JCM 5735, NBRC 10582
Bensingtonia thailandicaJCM 10651, NBRC 102560
Bensingtonia yuccicolaIFM 49223, JCM 6251, NBRC 10596
Curvibasidium cygneicollumIFM 48566, IFM 48595, JCM 9029, JCM 10310, NBRC 100752
Glaciozyma antarcticaJCM 9057, NBRC 1917
Kurtzmanomyces insolitusJCM 10409, NBRC 10839
Kurtzmanomyces tardusJCM 10490
Leucosporidium creatinivorumIFM 50467, JCM 10699
Leucosporidium felliiJCM 9887
Leucosporidium fragariumJCM 3930, NBRC 10411
Leucosporidium intermediumIFM 49876, JCM 5291, NBRC 10178
Leucosporidium scottiiIFM 49208, JCM 9052, NBRC 1923
Leucosporidium yakuticumJCM 10701
Occultifur externusJCM 10725
Platygloea disciformisMAFF 235764, NBRC 32431
Rhodosporidium azoricumJCM 11251
Rhodosporidium babjevaeIFM 48570, IFM 48599, JCM 9279
Rhodosporidium diobovatumIFM 48535, JCM 3787, NBRC 1830
Rhodosporidium fluvialeIFM 48601, JCM 10311
Rhodosporidium kratochvilovaeIFM 48536, JCM 8171
Rhodosporidium lusitaniaeIFM 48569, JCM 8547
Rhodosporidium paludigenumIFM 48537, JCM 10292, NBRC 10547
Rhodosporidium sphaerocarpumIFM 48538, JCM 8202, NBRC 1937
Rhodotorula araucariaeIFM 48501, JCM 3770, NBRC 10054
Rhodotorula armeniacaIFM 48594, JCM 8977
Rhodotorula aurantiacaIFM 40059, JCM 3771, NBRC 754
Rhodotorula auriculariaeIFM 48503, JCM 1597, NBRC 1580
Rhodotorula benthicaJCM 10901
Rhodotorula bogoriensisIFM 48505, JCM 1692, NBRC 1966
Rhodotorula buffoniiIFM 48506, JCM 3929, NBRC 10268
Rhodotorula calyptogenaeJCM 10899
Rhodotorula cresolicaIFM 50680, JCM 10955
Rhodotorula diffluensIFM 48507, JCM 1695, NBRC 10328
Rhodotorula ferulicaIFM 48509, JCM 8231, NBRC 10769
Rhodotorula foliorumIFM 48510, JCM 1696, NBRC 10410
Rhodotorula glutinisIFM 48391, IFM 57694, JCM 8208
Rhodotorula graminisIFM 48392, JCM 3775, NBRC 10747
Rhodotorula hordeaJCM 3932, NBRC 10412
Rhodotorula hylophilaIFM 48513, JCM 1805, NBRC 10414
Rhodotorula ingeniosaIFM 48514, JCM 9031, NBRC 10002
Rhodotorula javanicaIFM 48515, JCM 9032, NBRC 10285
Rhodotorula lysiniphilaJCM 5951
Rhodotorula marinaIFM 5761, JCM 3776, NBRC 928
Rhodotorula minutaIFM 48518, JCM 3780, JCM 10953
Rhodotorula mucilaginosaIFM 48530, JCM 8115
Rhodotorula nothofagiIFM 48568, JCM 9034
Rhodotorula philylaIFM 48521, JCM 3933, NBRC 10417
Rhodotorula phylloplanaIFM 48598, JCM 9035
Rhodotorula pilatiIFM 48522, JCM 9036, NBRC 10244
Rhodotorula pustulaIFM 48523, JCM 3934, NBRC 10248
Rhodotorula slooffiaeJCM 10954
Rhodotorula sonckiiIFM 48524, JCM 3935, NBRC 10420
Rhodotorula sp.JCM 8162
Rhodotorula vanillicaIFM 50457, JCM 9741
Rhodotorula yarrowiiIFM 48682, IFM 49632, JCM 8232
Sakaguchia dacryoideaIFM 48190, JCM 3795
Sporidiobolus pararoseusJCM 5350
Sporidiobolus salmonicolorJCM 1841
Sporidobolus microsporusJCM 6882
Sporidobolus ruineniaeJCM 1839, NBRC 1689
Sporobolomyces alborubescensJCM 5352, NBRC 10585
Sporobolomyces bischofiaeJCM 10338
Sporobolomyces blumeaeJCM 10212
Sporobolomyces carnicolorIFM 48656, JCM 3766, NBRC 1107
Sporobolomyces coprosmaeJCM 8772
Sporobolomyces coprosmicolaJCM 8767
Sporobolomyces dimmenaeJCM 8762
Sporobolomyces diospyriJCM 12157
Sporobolomyces falcatusJCM 6838, NBRC 10587
Sporobolomyces fushanensisJCM 12422
Sporobolomyces gracilisJCM 2963, NBRC 1227
Sporobolomyces griseoflavusJCM 5653, NBRC 10589
Sporobolomyces inositophilusJCM 5654, NBRC 10590
Sporobolomyces kluyverinieliiJCM 6356, NBRC 10591
Sporobolomyces lactophilusJCM 7595
Sporobolomyces linderaeJCM 8856
Sporobolomyces magnisporusJCM 11898
Sporobolomyces marcillaeJCM 6883
Sporobolomyces novazealandicusJCM 8756
Sporobolomyces nylandiiJCM 10213
Sporobolomyces odoratusJCM 11641
Sporobolomyces ogasawarensisJCM 10326
Sporobolomyces oryzicolaJCM 5299, NBRC 10180
Sporobolomyces phyllomatisJCM 7549
Sporobolomyces poonsookiaeJCM 10207
Sporobolomyces pyrrosiaeJCM 12159
Sporobolomyces salicinusJCM 2959, NBRC 10592
Sporobolomyces singularisJCM 5356, NBRC 10594
Sporobolomyces subbrunneusJCM 5278
Sporobolomyces syzygiiJCM 10337
Sporobolomyces taupoensisJCM 8770
Sporobolomyces tsugaeJCM 2960, NBRC 10595
Sporobolomyces vermiculatusJCM 10224
Sterigmatomyces elviaeIFM 48500, IFM 49894, JCM 1602, JCM 1822, NBRC 1843, NBRC 1912
Ustilago maydisIFM 49220, JCM 2005