PriMicro Database

For classification, identification and molecular phylogenetic analyses of microbes

Primer Detail

Primer name
CPTALL-5
Gene name
viral capsid/coat protein gene
Primer sequence (5'-3')
YASYTTTDRGGTTCAATTCC
Direction
F
Category
specific primer
Target
Virus
Paired primer
CPTALL-3
Reference
Choi, S .K., Choi, J .K., Park, W .M. and Ryu, K .H. (1999) RT-PCR detection and identification of three species of cucumoviruses with a genus-specific single pair of primers. Journal of Virological Methods 83: 67-73.
Literature
Uehara-Ichiki, T., Fuji, S., Sugimoto, R., Ohashi, M., Yabunaka, K., Kitaya, M., Yamashita, K., Hanada, K. and Aoki, T. (2016) Detection and application of viral capsid/coat protein genes of plant viruses preserved in the NARO Genebank (MAFF). Microbial Resources and Systematics 32: 39-47.
Reference Strain
Cucumovirus Tomato aspermy virusMAFF 104038, MAFF 260123, MAFF 260124, MAFF 715036